NAMD Package Benchmarking on the Base of Armenian Grid Infrastructure

The parallel scaling (parallel performance up to 48 cores) of NAMD package has been investigated by estimation of the sensitivity of interconnection on speedup and benchmark results - testing the parallel performance of Myrinet, Infini-band and Gigabit Ethernet networks. The system of ApoA1 of 92 K atoms, as well as 1000 K, 330 K, 210 K, 110 K, 54 K, 27 K and 16 K has been used as testing systems. The Armenian Grid infrastructure (ArmGrid) has been used as a main platform for series of benchmarks.

Provided by: Scientific Research Publishing Topic: Data Management Date Added: Feb 2012 Format: PDF

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