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Exploiting MD5 collisions
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If you are not convinced that MD5 hash function is no longer adecuate for file verification, read this article:
http://www.codeproject.com/useritems/HackingMd5.asp
Also on my blog I collected a lot of information about the hacking to MD5 function
http://www.darksideprogramming.org/archives/criptography/index.html