Depends
Most UNIX based computers run on RISC Based Processors instead of Intel Based.
RISC based are far more powerfull than Intel Based.
The fact of the matter is :-
If you want to run a mission critical application ie you are a bank, university, government department and want high availability and high reliability and performance then choose Unix.
During a presentation at the Nasscom-Gartner Summit, recently held in Mumbai, Gartner Analyst Mathew Boon said that RISC/Unix systems "will survive as a profitable, niche through 2010." Boon said RISC systems will co-exists with Intel 64-bit Itanium servers, in the high-end power-driven segment. "RISC/Unix systems will be used for large CPU complexes, while Itanium will be preferred for small CPU complexes," said Boon.
This means that RISC/Unix systems would continue to be used in 'Big iron' systems that use multiple processors and offer massive computing power. Such systems are generally high-availability, high-reliability systems used for critical tasks that run round the clock. There are three major players in this segment: HP, IBM and Sun. Eventually, Intel could also join this list as it gets into verticals, beginning with Telecom.
http://www.networkmagazineindia.com/200212/techup1.shtml