Netware Migration to Win2k

How do I move data from a netware Server(4.10) to a Windows 2000 server and retain all the links (Excel, Word, and AutoCad)that were created and pointing to the Netware server? I called Microsoft and they stated that you would have to move each fileseparately and then adjust the pointer manually. We are talking Thousands of files here. Any help will be greatly appreciated.
Thanks in advance.