This could be the effect of many things.
here is a list of things i would look into fist.
close all ports and set up a fire wall with limited access or take server offline while doing this.
1. open regestry:
windows key + r brings up comand prompt
type regedt32, press enter
im not sure if the hive keys are the same for XP and server, but they should be simaler.
you will have a list of hive keys
do not delet or change anything.
brows the keys and look for anthing that looks suspisios.
under current config:
------sytem
----------current control set
most of these should be at default with nothing set under data value unless you have done something in the course of configuring the sever.
you should recognize these easily
2. open msconfig
type msconfig in the command prompt.
on the sixth tab over, anything that is a hk** may be important. cross cheack them with the registry and make sure they are not trojans / worms. disaable all that is not a legitamet hk** and restart computer. most of the rest of the list will be things like software and back ground programs.
3.bring up task manager and look at the prossess tab. anything suspisious: find its exe. file and scan for virus.
4. memory issue
i would not recomend running any version of server 2003 without 512 RAM.
***under:
system
-------advanced
------------performance
set vertual memory (page file) - minimum and maximum to 1.5x the amount of memory in your machine. this will help reduce fragmentaion of page file.
5. Defragment and sick clean up.
probably not a big deal, but it might help.
i hope this helps. im still only in my first year of college.