First, open a program (doesn't matter which, take Internet Explorer for example). It will appear now on the taskbar.
If I understand you correct; when you do Right-mouse > "toolbars" and then "quick launch", the Quick launch comes back left from the system-tray instead of on the right of start-button.
If this is the cause, just drag de Quick Launch into the direction of the start-button; you will notice that the open programs will appear now on the right of the Quick Launch, and this is the way it is by default. Hopefully this has solved your issue.
All the best!
Note: If you are using XP, you should click right-mouse and uncheck "lock taskbar" (if it's checked) otherwise you are not able to drag.