Windows 2003 R2 DFS-R Has issues

We have implemeneted DFS-R and have had random issues. Sometimes things go missing.

We have 2 servers, one local the other at a remote office.

Sometimes when people add files from the remote office it isn't replicated here. Sometimes it is, and sometimes, it gets over written by the server here (local).

I run the diagnostics and it kicks back :

WARNINGS (There is 1 warning to report)

One or more replicated folders have sharing violations.

Affected replicated folders: Data

Description: Due to ongoing sharing violations, DFS Replication cannot replicate files in the replicated folders listed above. This problem is affecting 1 files in 1 replicated folders. Event ID: 4302
Last occurred: Thursday, July 31, 2008 at 1:29:17 PM (GMT-5:00)
Suggested action: Verify that the files you want to replicate are closed and have no open handles to them. For information about troubleshooting sharing violations, see The Microsoft Web Site.

We have shared folders inside the DFS-R, I know this could be part of the problem. I can't seem to figure out how to get that warning to go away.

Thanks in advance.